| WP0226📎 | ⤓PDF | — | working_paper | cyto7: an open, surface-native cytoarchitectural type atlas of the human cortex with multimodal validation and a per-vertex confidence map | (2026) | 2026-09-06 17:09Z | ongoinginternalcollab | Ricardo Salvador, Borja Mercadal +2 | — | yes |
| WP0224 | — | — | working_paperblog | Truth Without Proof? Gödel, Turing, and Algorithmic Information | (2026) | 2026-08-28 17:44Z | ongoinginternalcollab | Giulio Ruffini | — | yes |
| WP0223 | — | — | working_paperblog | The Laws Don't Write the Textbook | (2026) | 2026-08-28 12:08Z | ongoinginternalcollab | Giulio Ruffini, Kaiti +1 | — | yes |
| WP0221📎 | ⤓PDF | — | working_paper | A Self-Fulfilling Prophecy of Noise: Phantom Percepts as Self-Sealing Model Edits in a Homeostatic Algorithmic Agent | (2026) | 2026-08-23 12:55Z | ongoinginternalcollab | Giulio Ruffini, Dirk de Ridder +3 | — | yes |
| WP0220📎 | ⤓PDF | — | working_paper | One Ledger, Two Projections: The Thermodynamic Arrow and Pattern Persistence under Reversible Dynamics | (2026) | 2026-09-04 12:07Z | ongoinginternalcollab | Giulio Ruffini, Kaiti +1 | — | yes |
| WP0215📎 | ⤓PDF | — | working_paper | Dynamics, Algorithms, and Structured Experience: What Must a Brain Simulation Preserve? | (2026) | 2026-09-14 18:27Z | prospectinternalcollab | Giulio Ruffini, Klaus | — | yes |
| WP0214📎 | ⤓PDF | — | working_paper | Gaia, Compressed: Pathwise and Compressor-Relative Measures of Regulation in Daisyworld | (2026) | 2026-08-01 18:35Z | prospectinternalcollab | Giulio Ruffini | — | yes |
| WP0212 | — | — | working_paper | Gaia, Compressed: Pathwise and Compressor-Relative Measures of Regulation in Daisyworld | (2026) | 2026-08-05 09:21Z | prospectinternalcollab | Giulio Ruffini, Ricard Solé +1 | — | yes |
| WP0211📎 | ⤓PDF | — | working_paper | The Agent as Mathematician: Proof, Verification, and Creation in an Algorithmic Agent | (2026) | 2026-08-16 13:04Z | ongoinginternalcollab | Giulio Ruffini | — | yes |
| WP0209📎 | ⤓PDF | — | working_paper | Computational Modelling for Neuropsychiatry: Agentic Whole-Brain Models | (2026) | 2026-07-23 18:14Z | prospectinternalcollab | Giulio Ruffini, Francesca Castaldo +1 | — | yes |
| WP0208📎 | ⤓PDF | — | working_paper | The Anatomy of an LLM Turn, and How Many Replicas Are Running: Replicas, sessions, and agents: three populations and a Fermi estimate of each | (2026) | 2026-07-20 15:17Z | prospectinternalcollab | Giulio Ruffini | — | yes |
| WP0207📎 | ⤓PDF | — | working_paper | Agentoptosis: Cross-Scale Tradeoffs in Algorithmic Persistence | (2026) | 2026-08-16 13:00Z | ongoinginternalcollab | Giulio Ruffini, Francesca Castaldo +2 | — | yes |
| WP0206 | — | — | working_paper | BOLD generation in NMMs | (2026) | 2026-07-20 07:12Z | prospectinternalcollab | Alex Just, Giulio Ruffini +2 | — | yes |
| WP0200📎 | ⤓PDF | — | working_paper | Whole-Brain Models and Algorithmic Irreversibility: The Arrow of Time as a Property of Observation, Not of the Brain | (2026) | 2026-07-14 20:55Z | prospectinternalcollab | Giulio Ruffini, Kaiti +1 | — | yes |
| WP0199📎 | ⤓PDF | — | working_paper | Slow-Wave Dominance Across Brain States: Three Mechanistic Routes, with a Focus on Stroke | (2026) | 2026-07-11 15:37Z | prospectinternalcollab | Giulio Ruffini | — | yes |
| WP0198📎 | ⤓PDF | — | working_paper | Computation, Transport, and the Boundary Fallacy | (2026) | 2026-07-11 09:04Z | prospectinternalcollab | Giulio Ruffini, Klaus | — | yes |
| WP0194📎 | ⤓PDF | zenodo | working_paper | KT and consciousness | (2026) | 2026-06-28 18:10Z | prospectinternalcollab | Giulio Ruffini | — | yes |
| WP0190📎 | ⤓PDF | zenodo | working_paper | Generating Deep Hierarchical Amplitude Modulation in Cortical Circuits | (2026) | 2026-06-28 18:09Z | completedinternalcollab | Giulio Ruffini, Klaus +1 | — | yes |
| WP0188📎 | ⤓PDF | zenodo | working_paper | Neural Rogue Waves: Extreme Events in Excitable Brain Media | (2026) | 2026-06-28 18:09Z | prospectinternalcollab | Giulio Ruffini, Klaus +1 | — | yes |
| WP0187📎 | ⤓PDF | zenodo | working_paper | Complexity or Spectrum? A Surrogate Program for Interpreting Lempel–Ziv Increases in EEG | (2026) | 2026-06-28 18:09Z | ongoinginternalcollab | Giulio Ruffini, Francesca Castaldo +1 | — | yes |
| WP0180📎 | ⤓PDF | zenodo | working_paper | Reversibility, Incompressibility, Energy, and Information: An Implication Matrix for Classical and Quantum Dynamics | (2026) | 2026-06-28 18:09Z | ongoinginternalcollab | Giulio Ruffini, Klaus +1 | — | yes |
| WP0179📎 | ⤓PDF | zenodo | working_paper | A Qubit Made of Synchronization: Scholes' Quantum-Like States, Read Pedagogically | (2026) | 2026-06-28 18:09Z | prospectinternalcollab | Giulio Ruffini | — | yes |
| WP0173📎 | ⤓PDF | zenodo | working_paper | Computation Lives on Foliations: Church--Turing, Gauge Symmetry, and the Mathematical Excess of Physics | (2026) | 2026-07-21 07:46Z | ongoinginternalcollab | Giulio Ruffini, Kaiti +2 | — | yes |
| WP0172📎 | ⤓PDF | zenodo | working_paper | Persistent Patterns are Agents: A persistence-first reading of the algorithmic agent | (2026) | 2026-06-28 18:09Z | prospectinternalcollab | Giulio Ruffini | — | yes |
| WP0125📎 | ⤓PDF | zenodo | working_paper | AGENT SOUPER | (2026) | 2026-06-28 18:09Z | ongoinginternalcollab | Giulio Ruffini, Klaus | — | yes |
| WP0075📎 | ⤓PDF | zenodo | working_paper | Compositional Dynamic Depth in Neural Networks: A Symmetry-Theoretic Foundation and Experimental Programme | (2026) | 2026-06-28 18:06Z | ongoinginternalcollab | Giulio Ruffini, Klaus | — | yes |
| WP0060📎 | ⤓PDF | zenodo | working_paper | ARCHEON BUILDER | (2026) | 2026-06-28 18:05Z | ongoinginternalcollab | Giulio Ruffini, Klaus | low | yes |
| WP0044 | — | — | working_paper | Brain connectivity profiles across altered states of consciousness | (2026) | 2026-05-24 17:56Z | prospectinternalcollab | Jakub Vohryzek, Giulio Ruffini | low | yes |
| WP0043 | — | — | working_paper | The role of rare long-range connectivity across phylogeny | (2026) | 2026-05-24 17:56Z | prospectinternalcollab | Jakub Vohryzek, Giulio Ruffini | — | yes |
| WP0021📎 | ⤓PDF | zenodo | working_paper | Algorithmic Signatures of Agenthood in Artificial Life: A Test of the Algorithmic Regulator in Lenia and Flow--Lenia (draft) | (2026) | 2026-06-28 18:04Z | ongoinginternalcollab | Giulio Ruffini | — | yes |
| WP0015📎 | ⤓PDF | zenodo | working_paper | Table of Algorithmic Life | (2026) | 2026-06-28 18:03Z | ongoinginternalcollab | Giulio Ruffini | low | yes |
| WP0009📎 | ⤓PDF | zenodo | working_paper | Algorithmic Values: Notation for Agents, Models, and Valence | (2026) | 2026-06-28 18:03Z | ongoinginternalcollab | Giulio Ruffini, Kaiti | — | yes |
