| WP0009📎 | ⤓PDF | zenodo | working_paper | Algorithmic Values: Notation for Agents, Models, and Valence | (2026) | 2026-06-28 18:03Z | ongoinginternalcollab | Giulio Ruffini, Kaiti | — | yes |
| WP0015📎 | ⤓PDF | zenodo | working_paper | Table of Algorithmic Life | (2026) | 2026-06-28 18:03Z | ongoinginternalcollab | Giulio Ruffini | low | yes |
| WP0021📎 | ⤓PDF | zenodo | working_paper | Algorithmic Signatures of Agenthood in Artificial Life: A Test of the Algorithmic Regulator in Lenia and Flow--Lenia (draft) | (2026) | 2026-06-28 18:04Z | ongoinginternalcollab | Giulio Ruffini | — | yes |
| WP0025 | — | — | working_paper | Origins of morality and cooperation | (2026) | 2026-05-24 17:56Z | prospectinternalcollab | Ismael Tito Freire González | low | yes |
| WP0027 | — | — | working_paper | A Comparative/Integrative Theory of Biological and Artificial Autonomy | (2026) | 2026-05-24 17:56Z | prospectinternalcollab | Ismael Tito Freire González, Adrián Fernández Amil | low | yes |
| WP0030 | — | — | working_paper | The evolution of agency: cognitive and computational mechanisms | (2026) | 2026-05-24 17:56Z | prospectinternalcollab | Ismael Tito Freire González | — | yes |
| WP0031 | — | — | working_paper | Cognitive architecture for autonomous robotic planetary exploration | (2026) | 2026-05-24 17:56Z | prospectinternalcollab | Ismael Tito Freire González | — | yes |
| WP0032 | — | — | working_paper | Social learning and cumulative cultural evolution: modeling the emergence of sociotechnical systems | (2026) | 2026-05-24 17:56Z | prospectinternalcollab | Ismael Tito Freire González | — | yes |
| WP0033 | — | — | working_paper | Simulating mood disorders in systems of interacting agents: the role of intrinsic and extrinsic factors in mood regulation | (2026) | 2026-05-24 17:56Z | prospectinternalcollab | Francisco Páscoa dos Santos, Francesca Castaldo +1 | — | yes |
| WP0034 | — | — | working_paper | Metastability/Criticality as an evolutionary set-point for cortical dynamics | (2026) | 2026-05-24 17:56Z | prospectinternalcollab | Francisco Páscoa dos Santos | — | yes |
| WP0035 | — | — | working_paper | Dynamical primitives of spontaneous activity in the cortex: the role of arousal and brain-body interactions | (2026) | 2026-05-24 17:56Z | prospectinternalcollab | Francisco Páscoa dos Santos, Francesca Castaldo +1 | — | yes |
| WP0036 | — | — | working_paper | Behavioral relevance of spontaneous ''brain'' dynamics in... | (2026) | 2026-04-19 18:33Z | prospectinternalcollab | Francisco Páscoa dos Santos | — | yes |
| WP0037 | — | — | working_paper | Criticality as a mechanism of structural coupling: understanding cortical dynamics through the cybernetic lens | (2026) | 2026-05-24 17:56Z | prospectinternalcollab | Francisco Páscoa dos Santos | — | yes |
| WP0043 | — | — | working_paper | The role of rare long-range connectivity across phylogeny | (2026) | 2026-05-24 17:56Z | prospectinternalcollab | Jakub Vohryzek, Giulio Ruffini | — | yes |
| WP0044 | — | — | working_paper | Brain connectivity profiles across altered states of consciousness | (2026) | 2026-05-24 17:56Z | prospectinternalcollab | Jakub Vohryzek, Giulio Ruffini | low | yes |
| WP0045 | — | — | working_paper | Tapiès, contemplative practices and modern neuroscience | (2026) | 2026-05-24 17:56Z | prospectinternalcollab | Jakub Vohryzek, Francesca Castaldo | — | yes |
| WP0046 | — | — | working_paper | Dynamic computational methods linking neuroimaging and microphenomenological accounts | (2026) | 2026-05-24 17:56Z | prospectinternalcollab | Jakub Vohryzek | — | yes |
| WP0060📎 | ⤓PDF | zenodo | working_paper | ARCHEON BUILDER | (2026) | 2026-06-28 18:05Z | ongoinginternalcollab | Giulio Ruffini, Klaus | low | yes |
| WP0064 | — | — | working_paper | Artificial Agency Program - Curiosity | (2026) | 2026-05-24 17:56Z | prospectinternalcollab | Richard Csaky | — | yes |
| WP0065 | — | — | working_paper | Foundational Human Modeling: A roadmap for brain-grounded multi-modal AI | (2026) | 2026-05-24 17:56Z | prospectinternalcollab | Richard Csaky | — | yes |
| WP0066 | — | — | working_paper | Agency and Unification under Epistemic Uncertainty | (2026) | 2026-05-24 17:56Z | prospectinternalcollab | Richard Csaky | — | yes |
| WP0067 | — | — | working_paper | Language as a Bottleneck of the Self | (2026) | 2026-05-24 17:56Z | prospectinternalcollab | Richard Csaky | — | yes |
| WP0075📎 | ⤓PDF | zenodo | working_paper | Compositional Dynamic Depth in Neural Networks: A Symmetry-Theoretic Foundation and Experimental Programme | (2026) | 2026-06-28 18:06Z | ongoinginternalcollab | Giulio Ruffini, Klaus | — | yes |
| WP0125📎 | ⤓PDF | zenodo | working_paper | AGENT SOUPER | (2026) | 2026-06-28 18:09Z | ongoinginternalcollab | Giulio Ruffini, Klaus | — | yes |
| WP0146 | — | — | working_paper | Electric fields carry unique information beyond spiking activity during working memory across species | (2026) | 2026-05-21 08:44Z | ongoinginternalcollab | Adrián Fernández Amil | — | yes |
| WP0147 | — | — | working_paper | Spatially-embedded, field-generating recurrent neural networks for multiscale neural computation | (2026) | 2026-05-21 08:44Z | ongoinginternalcollab | Adrián Fernández Amil | — | yes |
| WP0148 | — | — | working_paper | From bioelectric fields to neural manifolds: a dynamical theory of brain development | (2026) | 2026-05-21 08:44Z | prospectinternalcollab | Adrián Fernández Amil | — | yes |
| WP0149 | — | — | working_paper | Dissecting narrative construction and semantic search in LLMs with an entorhinal-hippocampal model | (2026) | 2026-05-21 08:44Z | prospectinternalcollab | Adrián Fernández Amil | — | yes |
| WP0150 | — | — | working_paper | Bringing the Ghost back in the Shell: self-modeling as multiscale inference and control of internal hidden states | (2026) | 2026-05-21 08:44Z | prospectinternalcollab | Adrián Fernández Amil | — | yes |
| WP0151 | — | — | working_paper | Self-generation of goals and reward functions in an allostatic reinforcement learning agent | (2026) | 2026-05-21 08:44Z | prospectinternalcollab | Adrián Fernández Amil | — | yes |
| WP0152 | — | — | working_paper | The Neuronal Umwelt: spikes as actions in a multi-scale ecology of adaptive agents | (2026) | 2026-05-21 08:44Z | prospectinternalcollab | Adrián Fernández Amil | — | yes |
| WP0153 | — | — | working_paper | Multiscale causal emergence in task-optimized recurrent neural networks | (2026) | 2026-05-21 08:44Z | ongoinginternalcollab | Adrián Fernández Amil | — | yes |
| WP0154 | — | — | working_paper | Compression, prediction, and information protocols across hierarchical social structures: revisiting Stafford Beer's management cybernetics for efficient social organization | (2026) | 2026-05-21 08:44Z | prospectinternalcollab | Adrián Fernández Amil | — | yes |
| WP0155 | — | — | working_paper | Material and algorithmic constraints on the self-replication, growth, and evolution of feral machines | (2026) | 2026-05-21 08:44Z | prospectinternalcollab | Adrián Fernández Amil | — | yes |
| WP0156 | — | — | working_paper | A brief history of technological analogies for brain theory and the unrealised potential of forgotten technologies | (2026) | 2026-05-21 08:44Z | prospectinternalcollab | Adrián Fernández Amil | — | yes |
| WP0157 | — | — | working_paper | Mortal computation, thermodynamics costs, and abstraction layers in digital and analog computers | (2026) | 2026-05-21 08:44Z | prospectinternalcollab | Adrián Fernández Amil | — | yes |
| WP0158 | — | — | working_paper | Analog-brain interfaces and the obsession for control: coupled dynamics through real-time image rendering of chaotic systems | (2026) | 2026-05-21 08:44Z | prospectinternalcollab | Adrián Fernández Amil | — | yes |
| WP0159 | — | — | working_paper | Voxel Matrix via neural compression: reverse archeology, deep-time archiving, and speculative dialogues with future intelligences | (2026) | 2026-05-21 08:44Z | prospectinternalcollab | Adrián Fernández Amil | — | yes |
| WP0160 | — | — | working_paper | Novel ion-gel nanofiber-based analog neuromorphic substrates for emulating neural networks with ephaptic interactions | (2026) | 2026-05-21 08:44Z | prospectinternalcollab | Adrián Fernández Amil | — | yes |
| WP0165 | — | — | working_paper | Understanding the interplay between naturalistic stimuli, circuit architecture and spontaneous dynamics in biophysically constrained spiking networks | (2026) | 2026-05-22 16:25Z | prospectinternalcollab | Francisco Páscoa dos Santos | — | yes |
| WP0166 | — | — | working_paper | Steering the dynamics of large-scale brain networks through nature exposure: a computational study | (2026) | 2026-05-22 16:25Z | prospectinternalcollab | Francisco Páscoa dos Santos | — | yes |
| WP0167 | — | — | working_paper | Ultranatural landscapes: exploring human perception through procedural art with enhanced naturalistic principles | (2026) | 2026-05-22 16:25Z | prospectinternalcollab | Francisco Páscoa dos Santos | — | yes |
| WP0172📎 | ⤓PDF | zenodo | working_paper | Persistent Patterns are Agents: A persistence-first reading of the algorithmic agent | (2026) | 2026-06-28 18:09Z | prospectinternalcollab | Giulio Ruffini | — | yes |
| WP0173📎 | ⤓PDF | zenodo | working_paper | Computation Lives on Foliations: Church--Turing, Gauge Symmetry, and the Mathematical Excess of Physics | (2026) | 2026-07-21 07:46Z | ongoinginternalcollab | Giulio Ruffini, Kaiti +2 | — | yes |
| WP0179📎 | ⤓PDF | zenodo | working_paper | A Qubit Made of Synchronization: Scholes' Quantum-Like States, Read Pedagogically | (2026) | 2026-06-28 18:09Z | prospectinternalcollab | Giulio Ruffini | — | yes |
| WP0180📎 | ⤓PDF | zenodo | working_paper | Reversibility, Incompressibility, Energy, and Information: An Implication Matrix for Classical and Quantum Dynamics | (2026) | 2026-06-28 18:09Z | ongoinginternalcollab | Giulio Ruffini, Klaus +1 | — | yes |
| WP0187📎 | ⤓PDF | zenodo | working_paper | Complexity or Spectrum? A Surrogate Program for Interpreting Lempel–Ziv Increases in EEG | (2026) | 2026-06-28 18:09Z | ongoinginternalcollab | Giulio Ruffini, Francesca Castaldo +1 | — | yes |
| WP0188📎 | ⤓PDF | zenodo | working_paper | Neural Rogue Waves: Extreme Events in Excitable Brain Media | (2026) | 2026-06-28 18:09Z | prospectinternalcollab | Giulio Ruffini, Klaus +1 | — | yes |
| WP0190📎 | ⤓PDF | zenodo | working_paper | Generating Deep Hierarchical Amplitude Modulation in Cortical Circuits | (2026) | 2026-06-28 18:09Z | completedinternalcollab | Giulio Ruffini, Klaus +1 | — | yes |
| WP0194📎 | ⤓PDF | zenodo | working_paper | KT and consciousness | (2026) | 2026-06-28 18:10Z | prospectinternalcollab | Giulio Ruffini | — | yes |
| WP0196📎 | ⤓PDF | zenodo | working_paper | From Structured Experience to Algorithmic Agency | (2026) | 2026-09-11 10:13Z | ongoingpubliccollab | Giulio Ruffini, Kaiti +3 | — | yes |
| WP0198📎 | ⤓PDF | — | working_paper | Computation, Transport, and the Boundary Fallacy | (2026) | 2026-07-11 09:04Z | prospectinternalcollab | Giulio Ruffini, Klaus | — | yes |
| WP0199📎 | ⤓PDF | — | working_paper | Slow-Wave Dominance Across Brain States: Three Mechanistic Routes, with a Focus on Stroke | (2026) | 2026-07-11 15:37Z | prospectinternalcollab | Giulio Ruffini | — | yes |
| WP0200📎 | ⤓PDF | — | working_paper | Whole-Brain Models and Algorithmic Irreversibility: The Arrow of Time as a Property of Observation, Not of the Brain | (2026) | 2026-07-14 20:55Z | prospectinternalcollab | Giulio Ruffini, Kaiti +1 | — | yes |
| WP0206 | — | — | working_paper | BOLD generation in NMMs | (2026) | 2026-07-20 07:12Z | prospectinternalcollab | Alex Just, Giulio Ruffini +2 | — | yes |
| WP0207📎 | ⤓PDF | — | working_paper | Agentoptosis: Cross-Scale Tradeoffs in Algorithmic Persistence | (2026) | 2026-08-16 13:00Z | ongoinginternalcollab | Giulio Ruffini, Francesca Castaldo +2 | — | yes |
| WP0208📎 | ⤓PDF | — | working_paper | The Anatomy of an LLM Turn, and How Many Replicas Are Running: Replicas, sessions, and agents: three populations and a Fermi estimate of each | (2026) | 2026-07-20 15:17Z | prospectinternalcollab | Giulio Ruffini | — | yes |
| WP0209📎 | ⤓PDF | — | working_paper | Computational Modelling for Neuropsychiatry: Agentic Whole-Brain Models | (2026) | 2026-07-23 18:14Z | prospectinternalcollab | Giulio Ruffini, Francesca Castaldo +1 | — | yes |
| WP0211📎 | ⤓PDF | — | working_paper | The Agent as Mathematician: Proof, Verification, and Creation in an Algorithmic Agent | (2026) | 2026-08-16 13:04Z | ongoinginternalcollab | Giulio Ruffini | — | yes |
| WP0212 | — | — | working_paper | Gaia, Compressed: Pathwise and Compressor-Relative Measures of Regulation in Daisyworld | (2026) | 2026-08-05 09:21Z | prospectinternalcollab | Giulio Ruffini, Ricard Solé +1 | — | yes |
| WP0214📎 | ⤓PDF | — | working_paper | Gaia, Compressed: Pathwise and Compressor-Relative Measures of Regulation in Daisyworld | (2026) | 2026-08-01 18:35Z | prospectinternalcollab | Giulio Ruffini | — | yes |
| WP0215📎 | ⤓PDF | — | working_paper | Dynamics, Algorithms, and Structured Experience: What Must a Brain Simulation Preserve? | (2026) | 2026-09-14 18:27Z | prospectinternalcollab | Giulio Ruffini, Klaus | — | yes |
| WP0220📎 | ⤓PDF | — | working_paper | One Ledger, Two Projections: The Thermodynamic Arrow and Pattern Persistence under Reversible Dynamics | (2026) | 2026-09-04 12:07Z | ongoinginternalcollab | Giulio Ruffini, Kaiti +1 | — | yes |
| WP0221📎 | ⤓PDF | — | working_paper | A Self-Fulfilling Prophecy of Noise: Phantom Percepts as Self-Sealing Model Edits in a Homeostatic Algorithmic Agent | (2026) | 2026-08-23 12:55Z | ongoinginternalcollab | Giulio Ruffini, Dirk de Ridder +3 | — | yes |
| WP0222📎 | ⤓PDF | zenodo | working_paper | From Kolmogorov to Free Energy: Data Compression as a Common Problem for AIT, MDL, Bayes, and the FEP | (2026) | 2026-09-11 10:14Z | ongoingpubliccollab | Giulio Ruffini, Klaus +1 | — | yes |
| WP0223 | — | — | working_paperblog | The Laws Don't Write the Textbook | (2026) | 2026-08-28 12:08Z | ongoinginternalcollab | Giulio Ruffini, Kaiti +1 | — | yes |
| WP0224 | — | — | working_paperblog | Truth Without Proof? Gödel, Turing, and Algorithmic Information | (2026) | 2026-08-28 17:44Z | ongoinginternalcollab | Giulio Ruffini | — | yes |
| WP0225📎 | ⤓PDF | zenodo | working_paperposter | Structured Dynamics in the Algorithmic Agent (ICMNS 2025 poster) | (2026) | 2026-09-11 10:14Z | completedpubliccollab | Giulio Ruffini, Francesca Castaldo +1 | — | yes |
| WP0226📎 | ⤓PDF | — | working_paper | cyto7: an open, surface-native cytoarchitectural type atlas of the human cortex with multimodal validation and a per-vertex confidence map | (2026) | 2026-09-06 17:09Z | ongoinginternalcollab | Ricardo Salvador, Borja Mercadal +2 | — | yes |
